Home
Explore
Guides

Country Tax Guides

All Guides Europe Americas Asia-Pacific Africa

VAT for Beginners

Indirect Tax 101
Tools
VAT Calculator GST Calculator Sales Tax Calculator VAT Number Check
Events Authors EN

Overviews

Court Decisions Expert Insights 🔊CJEU Podcast

Tax Updates

All News Europe Americas Asia-Pacific Africa

Topics

e-Invoicing Digital VAT Registration Tax Compliance and Reporting Tax Rates Nexus Tax Schemes Crypto Cross-Border Supply Customs ViDA Tax Returns

Indirect Taxes

VAT GST Sales and Service Tax Consumption tax PST Sales and Use Tax Digital Service Tax Excise Duty Japanese Consumption Tax

Other Taxes

Direct Taxes
Home
Learn About Tax
Tax News Tax Insights & Analyses Tax Guides Court of Justice of the European Union VAT for Beginners
Tools
VAT Calculator GST Calculator Sales Tax Calculator VAT Number Checker
Events Authors EN
Lithuania
Lithuania
Europe

Limitation of VAT Deduction and Corporation Tax in Lithuania: SACL Case Law Insights

April 15, 2025
Limitation of VAT Deduction and Corporation Tax in Lithuania: SACL Case Law Insights

🎧 Prefer to Listen?

Get the audio version of this article and stay informed without reading - perfect for multitasking or learning on the go.

The article examines the case of denial of the right to deduct input VAT, whileat the same time showing how the case law of the Supreme Administrative Court of Lithuania (hereinafter - the Supreme Administrative Court of Lithuania - the "SACL") deals with the limitation of costs in the calculation of corporate income tax.

Limitation of VAT deduction

In the case law of the Supreme Administrative Court, which is also based on the case law of the Court of Justice of the European Union, when it is established that transactions (economic operations) have not actually taken place, then the right to deduct VAT is denied.

For example, in a recent case before the Supreme Administrative Court, the issue was whether it was lawful and reasonable for the tax authorities to conclude that economic transactions between the applicant and other companies did not take place and that the company was therefore liable to pay additional tax.

Here, in response to the appellant's claims that the tax authorities should have investigated the good faith of the company, the Court noted that the dishonesty of an economic operator can only be proved when the actual existence of an economic transaction is established, whereas the conclusion that no economic transactions have taken place negates the obligation to prove the bad faith of the person seeking to exercise the right to deduct VAT. Moreover, the Supreme Administrative Court emphasised that, when assessing evidence, the court must be guided not only by the rules of evidence, but also by the laws of logic, the criteria of justice, reasonableness and fairness.

It should be noted that in the appeal lodged, the applicant put forward a group of arguments concerning transactions with JSC X and stated that it had actually purchased and installed goods from JSC X for its customers. The Court of Appeal disagreed with those arguments and annulled the applicant's right to deduct input VAT.

In summary, the Supreme Administrative Court (SACL) held that the tax authorities have the right to refuse to grant a taxable person the right to deduct VAT if it is established, on the basis of objective evidence, that the transactions on which the right is based are the result of abusive conduct or the taxable person's own tax evasion.

However, the Court also commented on the systematic approach to be taken in such a situation as regards the allocation of costs as allowable deductions for the purposes of corporation tax.

What is important to know about corporation tax after the VAT deduction has been disallowed?

In addition, it should be noted that the Supreme Administrative Court in the present judgment also revealed that another relevant issue was at stake in this case: the Court of First Instance, after having recognised that the fuel was actually supplied to the applicant under the invoices issued in the name of JSC X and JSC Y, and that the company had incurred the costs, and applying the provisions of Article 69(2) of the Law on Taxes and Duties, held that the company was entitled to recognise the cost of the acquisition of fuel as an allowable deduction, and annulled the order for the payment of corporation tax, default interest and penalty.

According to the Supreme Administrative Court, the evidence in the case shows that the applicant ignored the obvious indications of tax fraud and, in fact, failed to take elementary measures to ensure that the supply operations did not lead to tax fraud. The fact that the appellant's transactions with JSC X and JSC Y covered only a small part of the market for the petrol purchased by the applicant, and that the company had a long and honest history, does not invalidate the facts established in the present case that the company should have been aware of the fact that it was involved in a VAT fraudulent transaction when purchasing the goods.

However, the tax authorities disagreed with that assessment and argued that the court was unjustified in recognising, in the context of the other established facts, that the expenditure on which the costs are recognised may be based on documents which do not have the force of law; they also pointed out that the court had failed to consider Article 11(4) of the VAT Act. The Supreme Administrative Court found the above-mentioned arguments of the tax authorities to be well-founded and upheld the appeal of the tax authorities in this part.

It is relevant here that the Supreme Administrative Court stated that the court of first instance was guided by the principle of substance over form in the assessment of tax, which provides, inter alia, that where a taxpayer has made a mistake in the preparation of accounting documents and in the submission of the tax return, as well as in other cases where the taxpayer's activity does not comply with the formal requirements of the legal acts, but the content of the activity is in accordance with the circumstances to which the tax laws refer taxation, the tax shall be calculated in accordance with the corresponding provisions of the tax laws in question (Art. 69 (2) of the Law on Taxes and Customs (LAS). Thus, the aforementioned principle is a general principle of tax law, which is applicable in relation to other tax law provisions.

Article 11(4) of the ITA stipulates that expenditure on the basis of which costs are recognised may only be based on documents having legal force, which must contain all the requisite elements of accounting documents required by the legislation governing accounting. In addition to these requisites, the documents supporting the expenditure on the basis of which the costs are recognised must also contain such additional requisites as may be prescribed by the Government of the Republic of Lithuania or an institution authorised by it. The Supreme Administrative Court noted that these legal norms are important not only for the specific entity but also for the tax and economic environment in general, i.e. they ensure that all participants in economic transactions comply with their tax obligations and that unlawful activities, such as, in the case at hand, the trade in smuggled or stolen diesel fuel or diesel fuel that is not sold without payment of the necessary taxes, are eliminated, and they may not be ignored by the principle of the primacy of substance over form.

Moreover, in the present case, in the accounting records of Company S, economic transactions were recorded which did not take place between the undertakings referred to in the conditions specified. In addition, Company S expensed sums of money on the basis of accounting documents which do not have the force of law, that is to say, Company S recorded in its accounting records transactions which did not take place under the conditions set out between the undertakings referred to. It is apparent from the circumstances of the case that Company S does not have accounting documents showing the true content of the disputed economic transactions, such as the real parties to the transactions, the persons who represented them, the origin of the diesel fuel, etc. In the absence of actual content, there is no reason to apply the principle of substance over form.

The Supreme Administrative Court pointed out that in the case-law of the Supreme Administrative Court of Lithuania it has been noted that "the fact that accounting documents (in the present case - VAT invoices), which are used as a basis for the taxpayer's right to deduct certain costs from gross income for the purposes of calculating corporate income tax, are not in accordance with the law, does not reflect the true substance of the economic transaction, per se (in itself) gives rise to a presumption of the legal fact that a person cannot recognise (justify) a cost that reduces corporation tax on the basis of those accounting documents (VAT invoices) and the data recorded in them. In such a case, the taxpayer, in the same way as for the purpose of proving its right to deduct VAT on the basis of the relevant VAT invoices, must provide evidence (prove) the legal facts which entitle it to write off the costs - the type, quantity, value of the goods/services purchased, the seller (provider) of the goods/services, and any other circumstances relating to the incurrence of the costs in order to generate revenue.

The above interpretations and case law are considered to be of great importance in practice, as they are binding for both the tax administration and the entities in the proper discharge of their tax obligations.

What is the limitation of VAT deduction in Lithuania?
The limitation of VAT deduction occurs when transactions are found not to have actually taken place, leading to the denial of the right to deduct VAT.
How does the Supreme Administrative Court of Lithuania approach VAT fraud?
The Supreme Administrative Court assesses whether economic transactions truly occurred and whether they involved any fraudulent activities, such as tax evasion.
Can a company still claim corporation tax deductions if VAT is denied?
A company may be allowed to claim corporation tax deductions, provided it has legal documentation and evidence supporting the legitimacy of its expenses.
What does the principle of substance over form mean in tax law?
The principle of substance over form means that the real economic substance of transactions, rather than their formal appearance, determines their tax treatment.
How does the Supreme Administrative Court address costs based on invalid VAT invoices?
The Court ruled that invalid VAT invoices cannot be used to justify corporation tax deductions, and companies must prove the legitimacy of their expenses.
What are the key factors for determining whether a VAT deduction is valid?
Valid VAT deductions require objective evidence that the transactions occurred as claimed, and that the documents involved comply with legal requirements.
Lithuania
Europe
Tax Deductions
Court Decision
VAT

Associate Professor, Vilnius University Faculty of Law and Business School. 15 years of experience in tax and finance law, financial accounting law, author of numerous scientific and practical articles on tax issues and author of a textbook on public finance law. Dr. Martynas Endrijaitis

Featured Insights

How Registration Threshold Changes Impact Businesses | VAT, GST & Sales Tax Compliance

How Registration Threshold Changes Impact Businesses | VAT, GST & Sales Tax Compliance

🕝 May 30, 2025

Key Factors to Consider When Outsourcing Indirect Tax Compliance in the Digital Economy

🕝 May 22, 2025

Supreme Administrative Court of Lithuania Practice on Appealing Tax Administrator Decisions

🕝 May 19, 2025

US Sales Tax Exemption Certificates Explained for Retail & E-commerce Compliance

🕝 May 15, 2025

More News from Lithuania

Get real-time updates and developments from around the world, keeping you informed and prepared.

Lithuania to Increase Reduced VAT Rate to 12% in 2026 | VAT Law Amendments Update
Lithuania

Lithuania to Increase Reduced VAT Rate to 12% in 2026 | VAT Law Amendments Update

May 26, 2025
3 minutes
Supreme Administrative Court of Lithuania Practice on Appealing Tax Administrator Decisions
Lithuania

Supreme Administrative Court of Lithuania Practice on Appealing Tax Administrator Decisions

May 19, 2025
15 minutes
Supreme Administrative Court of Lithuania: Key Insights on Income Tax Relief for Companies
Lithuania

Supreme Administrative Court of Lithuania: Key Insights on Income Tax Relief for Companies

May 9, 2025
11 minutes
Limitation of VAT Deduction and Corporation Tax in Lithuania: SACL Case Law Insights
Lithuania

Limitation of VAT Deduction and Corporation Tax in Lithuania: SACL Case Law Insights

April 15, 2025
10 minutes
Lithuania's 2025 Investment Account Tax Exemption: Key Facts You Need to Know
Lithuania

Lithuania's 2025 Investment Account Tax Exemption: Key Facts You Need to Know

April 8, 2025
9 minutes
ECJ Case C-75/20: Transportation Costs and Customs Valuation Explaine
Europe

ECJ Case C-75/20: Transportation Costs and Customs Valuation Explaine

April 1, 2025
14 minutes
VAT Deduction Restrictions in the Absence of Actual Transactions: Insights from Lithuania's Supreme Administrative Court
Lithuania

VAT Deduction Restrictions in the Absence of Actual Transactions: Insights from Lithuania's Supreme Administrative Court

March 24, 2025
14 minutes
Understanding Lithuania's New Investment Account Tax Exemption in 2025
Lithuania

Understanding Lithuania's New Investment Account Tax Exemption in 2025

March 18, 2025
6 minutes
Restrictions on VAT Deduction: Key Legal Cases & Compliance Insights
Europe

Restrictions on VAT Deduction: Key Legal Cases & Compliance Insights

March 4, 2025
18 minutes
Lithuania Raises VAT Exemption Threshold for Small Businesses to €60,000 by 2026
Lithuania

Lithuania Raises VAT Exemption Threshold for Small Businesses to €60,000 by 2026

March 4, 2025
3 minutes
Car Depreciation Limits from 2025: New Tax Rules & VAT Impact Explained
Lithuania

Car Depreciation Limits from 2025: New Tax Rules & VAT Impact Explained

February 25, 2025
15 minutes
Lithuania’s 2025 Green Tax: New Limits on Car Depreciation Based on CO2 Emissions
Europe

Lithuania’s 2025 Green Tax: New Limits on Car Depreciation Based on CO2 Emissions

January 30, 2025
8 minutes
When Loan and Bond Costs Become Disallowable Deductions: Lithuanian SACL Ruling
Lithuania

When Loan and Bond Costs Become Disallowable Deductions: Lithuanian SACL Ruling

January 29, 2025
11 minutes
VAT in Lithuania: Rates, Registration, & Reporting Guide
Lithuania

VAT in Lithuania: Rates, Registration, & Reporting Guide

November 24, 2024
15 minutes

Stay Ahead of VAT Changes

Don’t miss out on crucial VAT developments that could impact your business or practice. 

Thanks for subscribing!
You can unsubscribe at any time.
VAT News Insights & Analyses Tax Guides Events About us Sponsors Authors Become a Contributor
Privacy policy
EU Tax Reform VAT News in Europe VAT for Digital Platforms Sales Tax GST ECJ Cases E-Invoicing
hello@vatabout.com